This is the github repository for the codes and analyses described in Klasek et al 2021, Frontiers in Microbiology, where we examined the influences of morphologically diverse B. rapa cultivars and soil block heterogeneity on bacterial rhizosphere communities using 16S rRNA gene sequencing.
Code for processing sequences and creating phyloseq objects
Phyloseq objects are available for samples from 2013 and 2014
Code for main figures 2-6 and supplemental figure S4
Code for supplemental figures S1-S3
Code for supplemental figure S5 which used FEAST for source tracking.
Code for generating supplementary table of all biomarkers detected in this study